| 1 | Armed Forces Medical College, HQ Training Team, AFMC , Near Race Course , Pune-411040 | Maharashtra University of Health Sciences, Nashik | 3 | Recognized for 1 seat. Recognized for increase of seats from 1 to 3. Previously under Pune University. |
| 2 | B.J.Govt.Medical College, Pune, Dean B.J.Govt,Medical College Pune Sassoon Hospital Compound JAy Prakash Narayan Road Pune | Maharashtra University of Health Sciences, Nashik | 2 | Permitted u/s 10(A) from 2014-15. This permission is conditional. |
| 3 | Govt. Medical College,Nagpur, Govt. Medical College, Medical Square, Hanuman Nagar, Nagpur 440003 | Maharashtra University of Health Sciences, Nashik | 2 | Recognized (previously under Nagpur/ RTM Nagpur University). |
| 4 | Grant Medical College, Mumbai | Maharashtra University of Health Sciences, Nashik | 4 | Recognized (previously under Bombay/Mumbai University). |
| 5 | Krishna Institute of Medical Sciences, Karad | Krishna Institute of Medical Sciences University (Deemed), Karad | 1 | Permitted u/s 10(A) from 2015-16. |
| 6 | Lokmanya Tilak Municipal Medical College, Sion, Mumbai | Maharashtra University of Health Sciences, Nashik | 4 | Recognized (previously under Bombay/Mumbai University). |
| 7 | Mahatma Gandhi Missions Medical College, C.S.N (Aurangabad) | MGM Institute of Health Sciences (Deemed University), Navi Mumbai | 1 | Recognized when degree granted on or after 2014 |
| 8 | N. K. P. Salve Instt. of Medical Sciences and Research Centre and Lata Mangeshkar Hospital, Nagpur | Maharashtra University of Health Sciences, Nashik | 1 | Permitted u/s 10(A) from 2013-14. |
| 9 | Padmashree Dr. D.Y.Patil Medical College, Navi Mumbai | Padmashree Dr. D Y Patil University (Deemed), Navi Mumbai | 1 | Recommended for LOP |
| 10 | Seth G.S. Medical College, Parel, Mumbai, SETH G.S.MEDICAL COLLEGE,ACHARYA DONDE MARG,PAREL,MUMBAI | Maharashtra University of Health Sciences, Nashik | 4 | Recognized (previously under Bombay/ Mumbai University). |
| 11 | TATA MEMORIAL CENTRE, OFFICE OF THE DIRECTOR ACADEMICS 13TH FLOOR HOMI BHABHA BLOCK TATA MEMORIAL HOSPITAL DR ERNEST BORGE | Homi Bhabha National Institute (Deemed University), Mumbai | 4 | Recognized when degree granted on or after 2016. |
| 12 | Topiwala National Medical College, Topiwala National Medical College Dr A L Nair Road Mumbai 400008 | Maharashtra University of Health Sciences, Nashik | 4 | Recognized for 2 seats previously under Bombay/ Mumbai University. Recognized for seats increased from 2 to 4 when degree granted on or after August 2014. |
| 13 | DR.D.Y. PATIL MEDICAL COLLEGE, PUNE, DR. D. Y. PATIL MEDICAL COLLEGE, HOSPITAL & RESEARCH CENTRE, SANT TUKARAM NAGAR PIMPRI, PUNE. | DR. D. Y. PATIL MEDICAL COLLEGE | 2 | M.Ch – Plastic & Reconstructive Surgery |
